{
  "_id": "6acfd7a5e2d863f6629536f8",
  "Package": "probmed",
  "Title": "Probabilistic Effect Sizes for Causal Mediation Analysis",
  "Version": "0.3.0",
  "Authors@R": "person(given = \"Davood\", family = \"Tofighi\",\nemail = \"dtofighi@gmail.com\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8523-7776\"))",
  "Description": "Compute P_med, a scale-free probabilistic effect size for\ncausal mediation analysis.",
  "License": "MIT + file LICENSE",
  "URL": "https://data-wise.github.io/probmed/,\nhttps://github.com/data-wise/probmed",
  "BugReports": "https://github.com/data-wise/probmed/issues",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "Config/testthat/edition": "3",
  "Remotes": [
    "data-wise/medfit@v0.3.0"
  ],
  "VignetteBuilder": "knitr, quarto",
  "RoxygenNote": "7.3.3",
  "Repository": "https://data-wise.r-universe.dev",
  "Date/Publication": "2026-06-22 04:46:18 UTC",
  "RemoteUrl": "https://github.com/Data-Wise/probmed",
  "RemoteRef": "main",
  "RemoteSha": "0486b012b20938cac1ae9703c5e971503f086d7a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-14 19:05:15 UTC",
    "User": "root"
  },
  "Author": "Davood Tofighi [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-8523-7776>)",
  "Maintainer": "Davood Tofighi <dtofighi@gmail.com>",
  "_user": "data-wise",
  "_type": "src",
  "_file": "probmed_0.3.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/11514c7acfea92c1d5d9e5aef689182b6eb639468376aeffa4462af10b3f01a1",
  "_filesize": 802909,
  "_sha256": "11514c7acfea92c1d5d9e5aef689182b6eb639468376aeffa4462af10b3f01a1",
  "_expires": "2027-01-22T19:27:30.000Z",
  "_created": "2026-10-14T19:05:15.000Z",
  "_published": "2026-10-14T19:27:32.977Z",
  "_buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116047330903,
      "time": 526,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11921199020"
    },
    {
      "job": 116047331004,
      "time": 449,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11921888031"
    },
    {
      "job": 116047331193,
      "time": 376,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11923435474"
    },
    {
      "job": 116047330965,
      "time": 417,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11923465312"
    },
    {
      "job": 116044852349,
      "time": 301,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11922675348"
    },
    {
      "job": 116047331083,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11921707285"
    },
    {
      "job": 116047330887,
      "time": 545,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11922098244"
    },
    {
      "job": 116047331093,
      "time": 441,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11921663071"
    },
    {
      "job": 116047331164,
      "time": 531,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11921403991"
    }
  ],
  "_upstream": "https://github.com/Data-Wise/probmed",
  "_commit": {
    "id": "0486b012b20938cac1ae9703c5e971503f086d7a",
    "author": "Davood Tofighi <dtofighi@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #13 from Data-Wise/dev\n\nRelease: v0.3.0",
    "time": 1782103578
  },
  "_maintainer": {
    "name": "Davood Tofighi",
    "email": "dtofighi@gmail.com",
    "login": "data-wise",
    "description": "Data science, R, Python, Statistics, biostatistics, Psychology, and Engineering!",
    "uuid": 1749560,
    "orcid": "0000-0001-8523-7776"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "medfit",
      "version": ">= 0.3.0",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "S7",
      "version": ">= 0.2.1",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "alabama",
      "role": "Suggests"
    },
    {
      "package": "EValue",
      "version": ">= 4.1.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "lavaan",
      "role": "Suggests"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "mediation",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    }
  ],
  "_owner": "data-wise",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-49",
      "n": 41
    },
    {
      "week": "2026-24",
      "n": 2
    },
    {
      "week": "2026-26",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2026-06-06"
    },
    {
      "name": "v0.2.0",
      "date": "2026-06-12"
    },
    {
      "name": "v0.3.0",
      "date": "2026-06-22"
    }
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "data-wise",
      "count": 58,
      "uuid": 1749560
    }
  ],
  "_userbio": {
    "uuid": 1749560,
    "type": "user",
    "name": "Davood Tofighi",
    "followers": 24,
    "description": "Data science, R, Python, Statistics, biostatistics, Psychology, and Engineering!"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/probmed"
  },
  "_devurl": "https://github.com/data-wise/probmed",
  "_pkgdown": "https://data-wise.github.io/probmed/",
  "_searchresults": 43,
  "_quarto": true,
  "_topics": [
    "quarto"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/probmed.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "extract_mediation",
    "GaugePmedResult",
    "incr_pmed",
    "IncrPmedResult",
    "pmed",
    "pmed_sensitivity",
    "PmedResult",
    "PmedSensitivity",
    "sobol_from_theta",
    "sobol_pmed",
    "SobolPmedResult",
    "ward_residual"
  ],
  "_help": [
    {
      "page": "extract_mediation",
      "title": "Re-export extract_mediation from medfit",
      "topics": [
        "extract_mediation"
      ]
    },
    {
      "page": "GaugePmedResult",
      "title": "Gauge-Calibrated Proportion Mediated Result",
      "topics": [
        "GaugePmedResult"
      ]
    },
    {
      "page": "incr_pmed",
      "title": "Incremental Mediated Elasticity Curve",
      "topics": [
        "incr_pmed"
      ]
    },
    {
      "page": "IncrPmedResult",
      "title": "Incremental Mediated Elasticity Result",
      "topics": [
        "IncrPmedResult"
      ]
    },
    {
      "page": "plot-PmedResult",
      "title": "Plot Bootstrap Distribution",
      "topics": [
        "plot-PmedResult"
      ]
    },
    {
      "page": "pmed",
      "title": "Compute P_med: Probabilistic Effect Size for Mediation",
      "topics": [
        "pmed"
      ]
    },
    {
      "page": "pmed_sensitivity",
      "title": "M-Y Confounding Sensitivity for a Proportion-Mediated Estimand",
      "topics": [
        "pmed_sensitivity"
      ]
    },
    {
      "page": "pmed-formula",
      "title": "Compute P_med from Formula",
      "topics": [
        "pmed-formula"
      ]
    },
    {
      "page": "pmed-MediationData",
      "title": "Compute P_med from MediationData",
      "topics": [
        "pmed-MediationData"
      ]
    },
    {
      "page": "pmed-ParallelMediationData",
      "title": "Compute parallel (joint) P_med from a ParallelMediationData object",
      "topics": [
        "pmed-ParallelMediationData"
      ]
    },
    {
      "page": "PmedResult",
      "title": "P_med Result Class",
      "topics": [
        "PmedResult"
      ]
    },
    {
      "page": "PmedSensitivity",
      "title": "P_med Sensitivity Result (M-Y Confounding)",
      "topics": [
        "PmedSensitivity"
      ]
    },
    {
      "page": "print-PmedResult",
      "title": "Print PmedResult",
      "topics": [
        "print-PmedResult"
      ]
    },
    {
      "page": "sobol_from_theta",
      "title": "Map corner means to the Sobol variance decomposition",
      "topics": [
        "sobol_from_theta"
      ]
    },
    {
      "page": "sobol_pmed",
      "title": "Sobol / Variance-Scale Proportion Mediated",
      "topics": [
        "sobol_pmed"
      ]
    },
    {
      "page": "SobolPmedResult",
      "title": "Sobol / Variance-Scale Proportion Mediated Result",
      "topics": [
        "SobolPmedResult"
      ]
    },
    {
      "page": "summary-PmedResult",
      "title": "Summary Method",
      "topics": [
        "summary-PmedResult"
      ]
    },
    {
      "page": "ward_residual",
      "title": "Gauge-Calibrated Proportion Mediated",
      "topics": [
        "ward_residual"
      ]
    }
  ],
  "_pkglogo": "https://github.com/Data-Wise/probmed/raw/main/man/figures/logo.png",
  "_readme": "https://github.com/Data-Wise/probmed/raw/main/README.md",
  "_rundeps": [
    "backports",
    "checkmate",
    "cli",
    "generics",
    "lifecycle",
    "MASS",
    "medfit",
    "nloptr",
    "rlang",
    "S7"
  ],
  "_vignettes": [
    {
      "source": "package-comparison.qmd",
      "filename": "package-comparison.html",
      "title": "Comparing probmed Workflows",
      "engine": "quarto::html",
      "headings": [
        "Feature Comparison",
        "Workflow 1: Base R (lm/glm)",
        "Workflow 2: lavaan",
        "Workflow 3: mediation",
        "Conclusion"
      ],
      "created": "2025-12-02 04:49:30",
      "modified": "2025-12-02 16:43:12",
      "commits": 3
    },
    {
      "source": "gauge-residual.qmd",
      "filename": "gauge-residual.html",
      "title": "Gauge-calibrated proportion mediated: the residual W",
      "engine": "quarto::html",
      "headings": [
        "The problem with a single proportion-mediated number",
        "A clean (additive) example",
        "An interaction breaks the split",
        "Non-binary-coded exposures: a0 / a1",
        "Inference for a skewed ratio",
        "Summary"
      ],
      "created": "2026-06-22 04:46:18",
      "modified": "2026-06-22 04:46:18",
      "commits": 1
    },
    {
      "source": "introduction.qmd",
      "filename": "introduction.html",
      "title": "Introduction to probmed",
      "engine": "quarto::html",
      "headings": [
        "Overview",
        "What is $P_{med}$?",
        "Installation",
        "Basic Example: Linear Mediation",
        "1. Simulate Data",
        "2. Estimate $P_{med}$",
        "3. Interpret Results",
        "MBCO intervals (deterministic)",
        "Advanced Example: Binary Outcome (GLM)",
        "1. Simulate Binary Data",
        "2. Estimate with GLM",
        "Conclusion"
      ],
      "created": "2025-12-02 03:17:22",
      "modified": "2026-06-14 19:57:16",
      "commits": 5
    },
    {
      "source": "parallel-mediation.qmd",
      "filename": "parallel-mediation.html",
      "title": "Parallel mediation: joint P_med",
      "engine": "quarto::html",
      "headings": [
        "Overview",
        "The joint estimand",
        "A worked example",
        "Plugin (point estimate)",
        "Parametric bootstrap",
        "Nonparametric bootstrap",
        "MBCO (deterministic)",
        "Scope and limitations"
      ],
      "created": "2026-06-14 19:57:16",
      "modified": "2026-06-14 20:28:27",
      "commits": 2
    }
  ],
  "_score": 4.411619705963231,
  "_indexed": true,
  "_nocasepkg": "probmed",
  "_universes": [
    "data-wise"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.0",
      "date": "2026-10-14T19:07:36.000Z",
      "distro": "resolute",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/f6fd816ae3079d0f22a1a6f07c17997e72b84a59a108ec54082003f3f004dafa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.3.0",
      "date": "2026-10-14T19:07:46.000Z",
      "distro": "resolute",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/d21017678c31884ead4c968d956ecf25a66b6289cbff64ced068aae94e52d75b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.0",
      "date": "2026-10-14T19:22:39.000Z",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/ddee817a872f464a8801a2043cd404652cea2422a90cdea3f4fdc036f537a753",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.3.0",
      "date": "2026-10-14T19:20:41.000Z",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/81b58d00433fc5767f99d612b275141338699256f82fa1d2208219283c90a9e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.0",
      "date": "2026-10-14T19:07:44.000Z",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/ce1c7b56e7648f6b5d608e398abb1ebade6d792a13baa3032da943f7fb7f790e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.0",
      "date": "2026-10-14T19:07:22.000Z",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/df726894ce5289f6f91beca126dfe2d363291aa00b58e09baa9e6042c38f13b4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.0",
      "date": "2026-10-14T19:07:15.000Z",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/c1e8b7b0d38da527930bd2bdf12418e56f07ccb934897a35551206d1c549602b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.3.0",
      "date": "2026-10-14T19:07:16.000Z",
      "commit": "0486b012b20938cac1ae9703c5e971503f086d7a",
      "fileid": "https://r2.ropensci.org/0fd9184bedec2396f08fa235ac8d6225a8b40a1a6c4d1e62c3cbc6e685b15e59",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/data-wise/actions/runs/38619933426"
    }
  ]
}