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  "Package": "medsim",
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  "Title": "Simulation Infrastructure for Mediation Analysis",
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  "Maintainer": "Davood Tofighi <dtofighi@gmail.com>",
  "Description": "Provides standardized infrastructure for conducting Monte\nCarlo simulation studies in mediation analysis. Features\ninclude environment-aware execution (local vs HPC cluster),\nparallel processing with progress reporting, ground truth\ncaching, automated result analysis, and publication-ready\nvisualization. Designed to work seamlessly with the\nmediationverse ecosystem: 'medfit', 'probmed', 'RMediation',\nand 'medrobust'.",
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  "Repository": "https://data-wise.r-universe.dev",
  "Date/Publication": "2026-10-25 03:28:07 UTC",
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  "_exports": [
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    "medsim_analyze",
    "medsim_analyze_coverage",
    "medsim_analyze_performance",
    "medsim_analyze_power",
    "medsim_audit_results",
    "medsim_cache_clear",
    "medsim_cache_exists",
    "medsim_cache_info",
    "medsim_cache_init",
    "medsim_cache_list",
    "medsim_cache_load",
    "medsim_cache_save",
    "medsim_check_results",
    "medsim_combine_chunks",
    "medsim_compare_configs",
    "medsim_compare_methods",
    "medsim_config",
    "medsim_detect_cores",
    "medsim_detect_environment",
    "medsim_estimand",
    "medsim_estimate_speedup",
    "medsim_figures",
    "medsim_get_optimal_cores",
    "medsim_method_bounds",
    "medsim_method_gauge",
    "medsim_method_ipw",
    "medsim_method_mbco_mi",
    "medsim_method_mc_ci",
    "medsim_method_pmed_mbco",
    "medsim_method_sobol",
    "medsim_nsim_for_mcse",
    "medsim_plot_combined_panel",
    "medsim_plot_coverage",
    "medsim_plot_error_boxplot",
    "medsim_plot_se_vs_estimate",
    "medsim_plot_timing",
    "medsim_rnonnormal",
    "medsim_run",
    "medsim_run_chunk",
    "medsim_run_parallel",
    "medsim_scenario",
    "medsim_scenario_dm",
    "medsim_scenario_gauge",
    "medsim_scenario_missing",
    "medsim_scenario_missing_grid",
    "medsim_scenario_numeric",
    "medsim_scenario_pmed",
    "medsim_scenario_sobol",
    "medsim_scenarios_mediation",
    "medsim_summarize_branch_switch",
    "medsim_table_accuracy",
    "medsim_table_comparison",
    "medsim_table_coverage",
    "medsim_table_performance",
    "medsim_table_power",
    "medsim_table_timing",
    "medsim_tables",
    "medsim_tables_workflow",
    "medsim_validate_scenario",
    "medsim_workflow",
    "medsim_write_submit_script",
    "medsim_write_table"
  ],
  "_help": [
    {
      "page": "medsim_amputate",
      "title": "Insert missing values under MCAR / MAR / MNAR",
      "topics": [
        "medsim_amputate"
      ]
    },
    {
      "page": "medsim_analyze",
      "title": "Analyze Simulation Results",
      "topics": [
        "medsim_analyze"
      ]
    },
    {
      "page": "medsim_analyze_coverage",
      "title": "Analyze Coverage Rates",
      "topics": [
        "medsim_analyze_coverage"
      ]
    },
    {
      "page": "medsim_analyze_performance",
      "title": "ADEMP performance summary (bias, SEs, RMSE) with Monte Carlo SEs",
      "topics": [
        "medsim_analyze_performance"
      ]
    },
    {
      "page": "medsim_analyze_power",
      "title": "Analyze Statistical Power",
      "topics": [
        "medsim_analyze_power"
      ]
    },
    {
      "page": "medsim_audit_results",
      "title": "Audit a combined results object for chunked-run integrity violations",
      "topics": [
        "medsim_audit_results"
      ]
    },
    {
      "page": "medsim_cache_clear",
      "title": "Clear Cache",
      "topics": [
        "medsim_cache_clear"
      ]
    },
    {
      "page": "medsim_cache_exists",
      "title": "Check if Cache Exists",
      "topics": [
        "medsim_cache_exists"
      ]
    },
    {
      "page": "medsim_cache_info",
      "title": "Get Cache Info",
      "topics": [
        "medsim_cache_info"
      ]
    },
    {
      "page": "medsim_cache_init",
      "title": "Initialize Cache Directory",
      "topics": [
        "medsim_cache_init"
      ]
    },
    {
      "page": "medsim_cache_list",
      "title": "List Cache Files",
      "topics": [
        "medsim_cache_list"
      ]
    },
    {
      "page": "medsim_cache_load",
      "title": "Load Object from Cache",
      "topics": [
        "medsim_cache_load"
      ]
    },
    {
      "page": "medsim_cache_save",
      "title": "Save Object to Cache",
      "topics": [
        "medsim_cache_save"
      ]
    },
    {
      "page": "medsim_check_results",
      "title": "Check Results for Errors",
      "topics": [
        "medsim_check_results"
      ]
    },
    {
      "page": "medsim_combine_chunks",
      "title": "Combine chunk RDS files produced by medsim_run_chunk()",
      "topics": [
        "medsim_combine_chunks"
      ]
    },
    {
      "page": "medsim_compare_configs",
      "title": "Compare Multiple Configurations",
      "topics": [
        "medsim_compare_configs"
      ]
    },
    {
      "page": "medsim_compare_methods",
      "title": "Compare Multiple Methods",
      "topics": [
        "medsim_compare_methods"
      ]
    },
    {
      "page": "medsim_config",
      "title": "Create Simulation Configuration",
      "topics": [
        "medsim_config"
      ]
    },
    {
      "page": "medsim_detect_cores",
      "title": "Detect Number of Available Cores",
      "topics": [
        "medsim_detect_cores"
      ]
    },
    {
      "page": "medsim_detect_environment",
      "title": "Detect Computing Environment",
      "topics": [
        "medsim_detect_environment"
      ]
    },
    {
      "page": "medsim_estimand",
      "title": "Declare the estimand kind for a simulation scenario",
      "topics": [
        "medsim_estimand"
      ]
    },
    {
      "page": "medsim_estimate_speedup",
      "title": "Estimate Parallel Speedup",
      "topics": [
        "medsim_estimate_speedup"
      ]
    },
    {
      "page": "medsim_figures",
      "title": "Generate all standard figures from simulation results",
      "topics": [
        "medsim_figures"
      ]
    },
    {
      "page": "medsim_get_optimal_cores",
      "title": "Get Optimal Number of Cores",
      "topics": [
        "medsim_get_optimal_cores"
      ]
    },
    {
      "page": "medsim_method_bounds",
      "title": "Bounds estimator adapter for differential-misclassification (DM) studies",
      "topics": [
        "medsim_method_bounds"
      ]
    },
    {
      "page": "medsim_method_gauge",
      "title": "Gauge-residual (P_med + W) estimator wrapper",
      "topics": [
        "medsim_method_gauge"
      ]
    },
    {
      "page": "medsim_method_ipw",
      "title": "Thin IPW estimator adapter (robustness appendix)",
      "topics": [
        "medsim_method_ipw"
      ]
    },
    {
      "page": "medsim_method_mbco_mi",
      "title": "MBCO-MI estimator adapter",
      "topics": [
        "medsim_method_mbco_mi"
      ]
    },
    {
      "page": "medsim_method_mc_ci",
      "title": "Monte-Carlo CI estimator adapter",
      "topics": [
        "medsim_method_mc_ci"
      ]
    },
    {
      "page": "medsim_method_pmed_mbco",
      "title": "MBCO confidence interval for P_med (two-branch method)",
      "topics": [
        "medsim_method_pmed_mbco"
      ]
    },
    {
      "page": "medsim_method_sobol",
      "title": "Sobol / functional-ANOVA variance-share estimator wrapper",
      "topics": [
        "medsim_method_sobol"
      ]
    },
    {
      "page": "medsim_nsim_for_mcse",
      "title": "Replications needed for a target coverage Monte Carlo SE",
      "topics": [
        "medsim_nsim_for_mcse"
      ]
    },
    {
      "page": "medsim_plot_combined_panel",
      "title": "Create Combined Multi-Panel Figure",
      "topics": [
        "medsim_plot_combined_panel"
      ]
    },
    {
      "page": "medsim_plot_coverage",
      "title": "Plot Coverage Rates",
      "topics": [
        "medsim_plot_coverage"
      ]
    },
    {
      "page": "medsim_plot_error_boxplot",
      "title": "Plot Error Distribution Boxplots",
      "topics": [
        "medsim_plot_error_boxplot"
      ]
    },
    {
      "page": "medsim_plot_se_vs_estimate",
      "title": "Diagnostic scatter of model SE against the point estimate",
      "topics": [
        "medsim_plot_se_vs_estimate"
      ]
    },
    {
      "page": "medsim_plot_timing",
      "title": "Plot Timing Comparison",
      "topics": [
        "medsim_plot_timing"
      ]
    },
    {
      "page": "medsim_rnonnormal",
      "title": "Draw nonnormal values with a target marginal skew/kurtosis",
      "topics": [
        "medsim_rnonnormal"
      ]
    },
    {
      "page": "medsim_run",
      "title": "Run Simulation Study",
      "topics": [
        "medsim_run"
      ]
    },
    {
      "page": "medsim_run_chunk",
      "title": "Run one chunk of a chunked SLURM array simulation",
      "topics": [
        "medsim_run_chunk"
      ]
    },
    {
      "page": "medsim_run_parallel",
      "title": "Run Tasks in Parallel",
      "topics": [
        "medsim_run_parallel"
      ]
    },
    {
      "page": "medsim_scenario",
      "title": "Create Custom Simulation Scenario",
      "topics": [
        "medsim_scenario"
      ]
    },
    {
      "page": "medsim_scenario_dm",
      "title": "Construct a differential-misclassification (DM) mediation scenario",
      "topics": [
        "medsim_scenario_dm"
      ]
    },
    {
      "page": "medsim_scenario_gauge",
      "title": "Create a gauge-residual (P_med + W) simulation scenario",
      "topics": [
        "medsim_scenario_gauge"
      ]
    },
    {
      "page": "medsim_scenario_missing",
      "title": "Construct a missing-data mediation scenario",
      "topics": [
        "medsim_scenario_missing"
      ]
    },
    {
      "page": "medsim_scenario_missing_grid",
      "title": "Build the full factorial of missing-data scenarios",
      "topics": [
        "medsim_scenario_missing_grid"
      ]
    },
    {
      "page": "medsim_scenario_numeric",
      "title": "Create a numeric accuracy simulation scenario",
      "topics": [
        "medsim_scenario_numeric"
      ]
    },
    {
      "page": "medsim_scenario_pmed",
      "title": "Create a P_med simulation scenario",
      "topics": [
        "medsim_scenario_pmed"
      ]
    },
    {
      "page": "medsim_scenario_sobol",
      "title": "Create a Sobol / functional-ANOVA variance-share simulation scenario",
      "topics": [
        "medsim_scenario_sobol"
      ]
    },
    {
      "page": "medsim_scenarios_mediation",
      "title": "Create Standard Mediation Scenarios",
      "topics": [
        "medsim_scenarios_mediation"
      ]
    },
    {
      "page": "medsim_summarize_branch_switch",
      "title": "Summarize the MBCO majority-branch rate per scenario",
      "topics": [
        "medsim_summarize_branch_switch"
      ]
    },
    {
      "page": "medsim_table_accuracy",
      "title": "Generate Accuracy Table",
      "topics": [
        "medsim_table_accuracy"
      ]
    },
    {
      "page": "medsim_table_comparison",
      "title": "Generate Method Comparison Table",
      "topics": [
        "medsim_table_comparison"
      ]
    },
    {
      "page": "medsim_table_coverage",
      "title": "Generate Coverage Table",
      "topics": [
        "medsim_table_coverage"
      ]
    },
    {
      "page": "medsim_table_performance",
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